YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34499282, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTAAKKAN PGYIWEWEGK DKSGKMIRGE LRAESEAVAK TQLRRQGINV AKIRRRRSGF  60
   61 GKKITEKDIT LFTRQLSTMM RAGVPLLQAF DIAAKGHSNP AVTRMLLEVR ADVETGLSLA 120
  121 EAFRKRPLYF DKLFCNIIAA GEAGGVLDTL LDKLATYKEK VMAIKSKIKS AMIYPSAIVG 180
  181 TAFIITAVIM IYVIPAFKDL FSSFGANLPA PTLFVIWLSD QFVHFWWLIF GTLFGAIFAF 240
  241 FYAFKRTPKM QEQMDRILLR LPVIGDIIRK ATIARWARTL STLFSAGVPL VEALDSVGGA 300
  301 AGNQVYAEAT RRIQADVSTG SSLNYSMQRT DLFPNMVLQM TSIGEESGSL DQMLDKVADF 360
  361 YEEEVDNAVA ALSSLLEPAI MVILGILIGG LVIAMYMPIF KMGQVVG

Type	Start	End	Confidence
Cytoplasmic	1	171	0.97
Transmembrane Helix	172	194	0.94
Non-Cytoplasmic	195	222	0.93
Transmembrane Helix	223	244	0.95
Cytoplasmic	245	378	0.74
Transmembrane Helix	379	400	0.92
Non-Cytoplasmic	401	407	0.63