YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34497986, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	37	0.93
Non-Cytoplasmic	38	45	0.77
Transmembrane Helix	46	64	0.95
Cytoplasmic	65	76	0.81
Transmembrane Helix	77	96	0.95
Non-Cytoplasmic	97	106	0.68
Transmembrane Helix	107	126	0.95
Cytoplasmic	127	134	0.88
Transmembrane Helix	135	155	0.90
Non-Cytoplasmic	156	161	0.78
Transmembrane Helix	162	183	0.91
Cytoplasmic	184	192	0.89
Transmembrane Helix	193	213	0.92
Non-Cytoplasmic	214	224	0.85
Transmembrane Helix	225	246	0.92
Cytoplasmic	247	254	0.82
Transmembrane Helix	255	276	0.88
Non-Cytoplasmic	277	282	0.80
Transmembrane Helix	283	305	0.89
Cytoplasmic	306	319	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTSTAMPAI HSQRNAYILL VLTMLMWSTN FIIARALHAE LGPFTLAFAR WGIALACVLP  60
   61 FALPRLRRNW SQLRAQWPLL LVLGLFGIGL TNTFVYRALQ TTTATNAVIL NSATPVMVLL 120
  121 LGSLYFRQRL SSRQWMGMTL ALCGALLIVL KGKLLEIGGF HFGGGDLFVL AGGLSWAIYT 180
  181 LGLRKLKPGI DPMVQMAALL LVGEAVLLPF FLGELSSRGL PSLDAGAAAS LLYLGALPSV 240
  241 VAYLLYNRAI AMVGTAKAAA FLYLMPAFGA MQSIWLLGEE LHWYHVAGLA AIFGGIALSS 300
  301 LSRGAARENA GAALRAKES