YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115445159, gi...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.45
Transmembrane Helix	6	20	0.30
Non-Cytoplasmic	21	45	0.58
Transmembrane Helix	46	66	0.86
Cytoplasmic	67	74	0.62
Transmembrane Helix	75	93	0.91
Non-Cytoplasmic	94	99	0.57
Transmembrane Helix	100	122	0.86
Cytoplasmic	123	134	0.69
Transmembrane Helix	135	158	0.83
Non-Cytoplasmic	159	164	0.69
Transmembrane Helix	165	185	0.95
Cytoplasmic	186	524	0.81
Transmembrane Helix	525	541	0.77
Non-Cytoplasmic	542	565	0.75
Transmembrane Helix	566	589	0.82
Cytoplasmic	590	600	0.84
Transmembrane Helix	601	623	0.90
Non-Cytoplasmic	624	630	0.74
Transmembrane Helix	631	652	0.89
Cytoplasmic	653	664	0.78
Transmembrane Helix	665	686	0.89
Non-Cytoplasmic	687	693	0.78
Transmembrane Helix	694	717	0.92
Cytoplasmic	718	746	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAALVAIA ASIGNLLQGW DNATIAGAVL YIKKEFKLES EPTVEGLIVA MSLIGATIIT  60
   61 TFSGPVSDWI GRRPMLILSS ILYFLSSLIM LWSPNVYVLL LARLIDGFGI GLAVTLVPLY 120
  121 ISETAPSEIR GLLNTLPQFS GSGGMFLSYC MVFGMSLLPS PDWRIMLGVL AIPSLFFFGL 180
  181 TIFYLPESPR WLVSKGRMAE AKKVLQKLRG REDVSGEMAL LVEGLEVGAD TSIEEYIIGP 240
  241 AIEPADEHVV DGDKDQITLY GPEEGQSWIA RPSKGPSILG SVLSLTSRHG SMVNQSVPLM 300
  301 DPIVTLFGSV HENMPHAGGS MRSTLFPNFG SMFSVTDQHP KVDQWDEENL HRDDEEYASD 360
  361 GAGGDYEDNV HSPLLSRQTT SAEGKDIAHH AHRGSALSMR RRSLLEEGGE AVSSTGIGGG 420
  421 WQLAWKWSER EGEDGKKEGG FKRIYLHQEE VPGSRRGSVI SLPGGGDAPE GSEFIHAAAL 480
  481 VSQPALYSKD IIEQRMSGPA MIHPSEAAAK GSSWKDLFEP GVRRALLVGV GIQILQQFAG 540
  541 INGVLYYTPQ ILEQAGVAVL LSNLGLSSAS ASILISSLTT LLMLPSIGLA MRLMDISGRR 600
  601 FLLLGTIPVL IASLVVLVVS NVIDLGTVAH AALSTISVII YFCCFVMGFG PIPNILCAEI 660
  661 FPTRVRGICI AICALTFWIG DIIVTYSLPV MLNAIGLAGV FGIYAVVCSI AFVFVFLKVP 720
  721 ETKGMPLEVI TEFFAVGAKQ MQATKA