YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50906493, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSGGSVVS IDVERISFGG KEHHIHTNHG PVSVAVYGDH DKPALVTYPD IALNHMSCFQ  60
   61 GLLFCPEAAS LLLHNFCIYH ISPPGHELGA APISPNAPIP SVDDLADQVA DVLDFFGLGS 120
  121 VMCLGVSAGA YILTLFAAKY RDRVLGLILV SPLCKPPTWT EWFYNKVASN LLYYYGMCGL 180
  181 VKEGLLQRYF SKEVRGCSDL PESDIVQACR SLLDQRQSMN VWRFVQTMNM RYDLTEDLKQ 240
  241 LQCRTLIFVG EYSQFHTEAV HMTSKLDRRY CALVEVQACG SLITEEQPHA MLIPMEYFFM 300
  301 GYGLYRPSQL DCSPRSPLSP FCISPDLLSP ESMGVKLKPI KTRVRLEV

Type	Start	End	Confidence
Cytoplasmic	1	60	0.70
Transmembrane Helix	61	78	0.58
Non-Cytoplasmic	79	114	0.85
Transmembrane Helix	115	137	0.74
Cytoplasmic	138	348	0.71