YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34102407, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFILRRLG LLVPTFFGIT LLTFALIRLI PGDPVEVMVG ERTLDPQMHA EALHRLGLDK  60
   61 PLYAQYFDYV VNLLHGNLGE SLVTKTSVWT EFKTLFPATL ELALSALLFA MVWGLLAGVL 120
  121 AAIKRGSLFD HGVMGISLTG FSMPIFWWGL ILIMFFSVKL GWTPVSGRMD LMFDIHPKTG 180
  181 FMLIDSWLAE SADPEGNAGA FRSALSHLIL PSIVLGTIPL AVIARMTRSS MLEVLREDYV 240
  241 RTARAKGLSP ARVIFIHTLR NALIPVLTVI GLQVGTLMGG AVLTETIFSW PGIGKWLIDA 300
  301 IARRDYPVVQ NGILMVATLV IVTNFVVDIL YGIANPRIRH AK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	30	0.92
Non-Cytoplasmic	31	101	0.96
Transmembrane Helix	102	123	0.91
Cytoplasmic	124	134	0.81
Transmembrane Helix	135	157	0.81
Non-Cytoplasmic	158	203	0.93
Transmembrane Helix	204	224	0.92
Cytoplasmic	225	261	0.92
Transmembrane Helix	262	284	0.87
Non-Cytoplasmic	285	312	0.87
Transmembrane Helix	313	334	0.91
Cytoplasmic	335	342	0.93