YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34496374, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKHAALAV CASLTLSGFA QAAGEIVIKF SHVVAPETPK GKAAEYFKKL AEQRTHGKVK  60
   61 VQVYPNSQLY KDKEELEALQ LGAVQMLAPS LAKFGPLGVK EFEVFDLPYV FDNYDEVNKV 120
  121 MHGPLGKQLL GKLETKGIKG LAYWDNGFKN FSANKPIKSP TDLKGMKIRI QSSKVLEEEM 180
  181 RTLGALPQVM AFSEVYQALQ TGVVDGTELE ASNLYTSKAY EVQKNLTLTQ HGFLGYALIV 240
  241 NKKFWDGLPA DVRAQLDSAV QDASVYANKI AKEENDKAVA AIKASGKTKV YVPTPQEREA 300
  301 FKKALLPVHQ KMASRIGPDL LKQIYKETGF NPGK

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	334	0.99