YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34495643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWQTWLLFV TTVFFVSATP GPNMLLAMTH GIHYGVRRTL MTCFGLMTAL GLIMLGSVAG  60
   61 LGALLATSEL LFSIVKYAGA LYLVYLGVKT WRSLPQPVAE LREDDSGRHG PWALFRRGFL 120
  121 VAMSNPKAFI FFTALFPQFM NAHQPQGPQL AILAATFYLI ESCWQLTYAS SGARLARWLN 180
  181 SARRLRLVNR FSGGAFVGAG LLLTGLSRQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.84
Transmembrane Helix	7	27	0.92
Cytoplasmic	28	39	0.71
Transmembrane Helix	40	65	0.85
Non-Cytoplasmic	66	72	0.62
Transmembrane Helix	73	92	0.82
Cytoplasmic	93	113	0.94
Transmembrane Helix	114	136	0.84
Non-Cytoplasmic	137	149	0.76
Transmembrane Helix	150	168	0.94
Cytoplasmic	169	186	0.90
Transmembrane Helix	187	206	0.95
Non-Cytoplasmic	207	209	0.80