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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MSL1_ORYSJ
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.59
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPMLSIASR SPSPALIAPH ASARATGLRA PFAGNRIVGW GWGDQTKSGT DRNRASICVV  60
   61 LFLRVRSGEP TQAPRDPPAA VGGGGCYVRL PAPPRDRDAV LYHVCLFTLL LCFIPITALA 120
  121 ESDIKNLFAL RKAIAVGKGF LHNWFELETP PCNWSGISCV GLTVVAIDLS STPLYVDFPS 180
  181 QIIAFQSLVR LNVSGCGFSG ELPEAMVNLQ HLQHLDLSDN QLGGPLPASL FDLKMLKVMV 240
  241 LDNNMFSGQL SPAIAHLQQL TVLSISTNSF SGGLPPELGS LKNLEYLDIH TNAFSGSIPA 300
  301 SFSNLSRLLY LDANNNNLTG SIFPGIRALV NLVKLDLSSN GLVGAIPKEL CQLKNLQSLI 360
  361 LSDNELTGSI PEEIGNLKQL EVLNLLKCNL MDTVPLSIGN LEILEGLYIS FNSFSGELPA 420
  421 SVGELRNLRQ LMAKSAGFTG SIPKELGNCK KLTTLVLSGN NFTGTIPEEL ADLVAVVLFD 480
  481 VEGNRLSGHI PDWIQNWSNV SSISLAQNMF DGPLPGLPLH LVSFSAESNR LSGSIPAKIC 540
  541 QGTFLQILRL NDNNLTGSID ETFKGCKNLT ELSLLDNHLH GEIPEYLALL PLVSLDLSHN 600
  601 NFTGMIPDRL WESSTILDIS LSDNQLTGMI TESIGKLLSL QSLSIDRNYL QGPLPRSIGA 660
  661 LRNLTALSLS GNMLSEDIPI QLFNCRNLVT LDLSCNNLTG HIPKAISHLT KLNTLVLSRN 720
  721 RLSGAIPSEL CVAFSRESHS ELEYVQHIGL IDLSRNRLTG HIPRAINNCS ILVELHLQDN 780
  781 LLSGTIPVEL AELRNITTID LSSNALVGPV LPWPVPLASL QGLLLSNNRL SGSIPSGIGN 840
  841 ILPQITMLDL SGNALTGTLP LDLLCKESLN HLDVSDNNIS GQIPFSCHED KESPIPLIFF 900
  901 NASSNHFSGS LDESISNFTK LTYLDLHNNS LTGRLPSAIA RVTSLYYLDL SSNDFSGTIP 960
  961 CGICGMFGLT FANFSGNRDG GTFTLADCAA EEGGVCAANR VDRKMPDHPF HVLEATICCI1020
 1021 ATAIVIVLVV ILVVYLRRRR KMLRRRQFVL VPAGDNAMAD HETTLSNNLL GRRRMKKREP1080
 1081 PSINLATFEH APVRVTVDEI MRATGNFDGM HVVGDGGFGT VYRAELPGGR RVAVKRLHGV1140
 1141 GRRFQGGERE FRAEMETVGK VRHPNLVPLL GYCAAGDERF LVYEYMEHGS LEDRLRGGGG1200
 1201 AALGWPERLT ICGGAARGLA FLHHGFVPHV IHRDVKSSNV LLGEGLQPRV SDFGLARIIS1260
 1261 ACETHVSTVL AGTLGYIPPE YALAMRCTAK GDVYSFGVVM LELLTGRPPT WSSAEVTAEG1320
 1321 DDERGGGGSL VGWVRWMAAR GRGGEVFDAC LPVSGAEREQ MARVLDVARD CTADEPWRRP1380
 1381 TMAEVARRVG AIEAMEYGPL VVAVSSGEPP AMP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle