YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115444527, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGQEAGSS SGGSGDGGAA APRRNTRKPK YSKFTQQELP ACKPILTPKW VISVFVLVGV  60
   61 IFVPIGLVSL KASRKVVEIV DRYDDACVPA NTTDKLAYIQ NPTISKNCRR TLKVPKDMDA 120
  121 PIFVYYQLDN FYQNHRRYVK SRSDAQLRDP KKANDTSTCD PEGTANGMAI VPCGLIAWSI 180
  181 FNDTYGFVRN SKNLPVDKKN ISWKSDREHK FGRDVFPKNF QNGSLIGGKT LDPNKSLSKQ 240
  241 EDLIVWMRTA ALPTFRKLYG RIHTDLKKGD TITVTLENNY NTYSFSGKKK LVLSTSTWLG 300
  301 GKNDFLGLAY LSVGGLCFFL AFAFTLLYLI KPRKMGDNNY LSWNRNPAGR

Type	Start	End	Confidence
Cytoplasmic	1	49	0.68
Transmembrane Helix	50	68	0.84
Non-Cytoplasmic	69	305	0.80
Transmembrane Helix	306	330	0.90
Cytoplasmic	331	350	0.83