YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|215701373, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLVRSPVT SPPAIAGAAS PSPSRSLSRR RAPPDAAAFP KPWVIPSSSV KSAACLQLQQ  60
   61 ARAPRRCARL LASAAEGGRR GEEGSPASSS DADDQAEALP FLESDSHHTQ TSKHGESGGS 120
  121 NSGGSRAGLF RTPISGGVHT ATSVHDLPPP ARAVRNLMEQ ARFAHLCTVM SRMHHRRAGY 180
  181 PFGSLVDFAP DPMGHPIFSL SPLAIHTRNL LEDPRCTVVV QVPGWSGLSN ARVTIFGDVV 240
  241 PLPADLQEWA HQQYVLKHQQ WASHQWGNFY YYKMQTISDI YFIGGFGTVA WLDVKEYEAL 300
  301 KPDKIATDGG EQSLKELNAM YSKPLKELLS TEIEVDDAAL ISIDSKGIDI RVRQGAQFNI 360
  361 QRIAFELHYS VETLEEAKEA IRRILGKSRW HAKF

Type	Start	End	Confidence
Signal Peptide	1	26	0.53
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	394	0.99