YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229516564, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGVPREQL AGETRVAASP SSVEQLIKLG FEVCIESKAG ALASFDDAAY TAAGATIGSR  60
   61 EEIWACPLIL KVNAPSDDEI ALLKEGATLV SFIWPAQNPA LMEKLSSKNI NVLAMDAVPR 120
  121 ISRAQALDAL SSMANIAGYR AVVEAAHEFG RFFTGQITAA GKVSPAKVFV AGAGVAGLAA 180
  181 IGAAGSLGAI VRAFDVRPEV KEQVQSMGAE FLEVNFQETA GSGDGYAKEM SDEFNRKAAE 240
  241 LYAAQAKDVD IIITTALIPG KPAPKLITKE MVDSMKAGSV IVDLAAANGG NCEYTVKDQV 300
  301 ITTDNGVKVI GYTDMVGRLP TQSSQLYATN LVNLLKLLCK EKDGNIDINF EDVVLRGVTV 360
  361 VKAGEITWPA PPIQVSAQPQ QKAKVQPTKA QKKEPEPTSP VKKLVGLAVG VGLFAWVASV 420
  421 APAAFLGHFT VFVLACVVGY YVVWNVTHAL HTPLMSVTNA ISGIIVVGAL LQIGQGSGIV 480
  481 TFLAFIAVLI ASINIFGGFT VTKRMLEMFR KN

Type	Start	End	Confidence
Cytoplasmic	1	128	0.58
Transmembrane Helix	129	143	0.37
Non-Cytoplasmic	144	168	0.74
Transmembrane Helix	169	191	0.80
Cytoplasmic	192	399	0.94
Transmembrane Helix	400	418	0.89
Non-Cytoplasmic	419	424	0.67
Transmembrane Helix	425	444	0.94
Cytoplasmic	445	453	0.74
Transmembrane Helix	454	473	0.93
Non-Cytoplasmic	474	479	0.77
Transmembrane Helix	480	501	0.94
Cytoplasmic	502	512	0.92