YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|262151207\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAYSKNQN CFSPTEMMAE AEKFALSKAK KTSGMILGLS VMAGAFIGLA FLFYITVTTG  60
   61 SASAGWGLSR LAGGVAFSMG LILIVICGGE LFTSSVLSSI SWANREISFG KMLSIWGKVY 120
  121 VGNFIGAIFL LLLVTAAGLY QLDEGQWGLN ALNIAQHKLH HTTVQAFALG ILCNLLVCLA 180
  181 IWLTFSSANA MTKAAMTIMP VAMFVSSGFE HCVANMFMVP LGIVIQNFAP DSFWQQVGVT 240
  241 ASQYSDLNVT QFITANLIPV TLGNIVGGAV LVGLANWSIY RRPQLKAANV VTITETQALT 300
  301 SVKETLMKST ITVKDMMNSQ PVTLSVDMTT PAAIDTLLDH HLSAAPVVDM QGRLVGVLSS 360
  361 HDVMVDLWCQ DYLPSQDQKV VDLMTRDVIA IDVNDKLVDV AEFFCIDKEQ LFPTTSMGIA 420
  421 TRFSALSLEE RAKSMKVNKP HMLPVLHNGQ LVGVLERNDV LEALRPIYGE RVRIVKDKAL 480
  481 ARA

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	57	0.92
Non-Cytoplasmic	58	74	0.85
Transmembrane Helix	75	98	0.88
Cytoplasmic	99	118	0.86
Transmembrane Helix	119	140	0.94
Non-Cytoplasmic	141	163	0.93
Transmembrane Helix	164	185	0.93
Cytoplasmic	186	200	0.76
Transmembrane Helix	201	224	0.80
Non-Cytoplasmic	225	256	0.89
Transmembrane Helix	257	277	0.92
Cytoplasmic	278	483	0.98