YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115453925, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMAAAVAS SPSPSPASTR LLRGHHPPPS CSAPSLLRLT RSSRRLRLRA AAAAEEADVL  60
   61 PGPGAEGEMA TGGRLEEQPE GPIGGSQVDI GGLAFQGDMG GGGFAGGSGG AGAGGGDGNK 120
  121 MLDRGINTAI VLGASTYALT KLLTVDHDYW HGWTIFEILR YMPEHNWSAY EEALKTNPVL 180
  181 AKMMISGVVY SLGDWIAQCY EGKPIFEFDR ARMFRSGLVG FTLHGSLSHY YYHFCEALFP 240
  241 FKDWWVVPAK VVFDQTAWSA IWNSIYFVVL GFLRLESPAT ISSELKSTFW PMLTAGWKLW 300
  301 PFAHLVTYGL VPVEQRLLWV DCVELIWVTI LSTYSNEKSE ARNSEDASTS NASNDNSI

Type	Start	End	Confidence
Signal Peptide	1	19	0.84
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	358	0.85