YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9657525, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.97
Transmembrane Helix	43	61	0.92
Non-Cytoplasmic	62	81	0.86
Transmembrane Helix	82	101	0.91
Cytoplasmic	102	110	0.91
Transmembrane Helix	111	132	0.93
Non-Cytoplasmic	133	136	0.78
Transmembrane Helix	137	159	0.87
Cytoplasmic	160	177	0.86
Transmembrane Helix	178	199	0.92
Non-Cytoplasmic	200	206	0.83
Transmembrane Helix	207	226	0.96
Cytoplasmic	227	271	0.94
Transmembrane Helix	272	291	0.88
Non-Cytoplasmic	292	311	0.94
Transmembrane Helix	312	331	0.92
Cytoplasmic	332	339	0.88
Transmembrane Helix	340	359	0.93
Non-Cytoplasmic	360	368	0.78
Transmembrane Helix	369	391	0.93
Cytoplasmic	392	400	0.85
Transmembrane Helix	401	423	0.90
Non-Cytoplasmic	424	432	0.82
Transmembrane Helix	433	455	0.92
Cytoplasmic	456	469	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDSRGLYH RKNNEVTMFE LFKPAAHTQR LPSDKVDSVY SRLRWQLFIG IFVGYAGYYL  60
   61 GRKNFSLAMP YLIEQGFSRG DLGVALGAVS IAYGLSKFLM GNVSDRSNPR YFLSAGLLLS 120
  121 ALVMFCFGFM PWATGSITAM FILLFLNGWF QGMGWPACGR TMVHWWSRKE RGEIVSVWNV 180
  181 AHNVGGGLIG PIFLLGLWMF NDDWRTAFYV PAFFAVLVAV FTWLVMRDTP QSCGLPPIEE 240
  241 YKNDYPDDYD KSHENEMTAK EIFFKYVFNN KLLWSIAIAN AFVYLIRYGV LDWAPVYLKE 300
  301 AKHFTVDKSS WAYFLYEWAG IPGTLLCGWI SDKVFKGRRA PAGILFMVLV TLAVLVYWFN 360
  361 PAGNPAVDMA ALVAIGFLIY GPVMLIGLYA LELAPKKAAG TAAGLTGLFG YLGGAVAANA 420
  421 ILGYTVDHFG WDGGFMVLVA SCVLSVLCLI YAFVGERAHH NDKLKQATI