YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125619162, gi...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.85
Transmembrane Helix	12	31	0.80
Non-Cytoplasmic	32	59	0.89
Transmembrane Helix	60	81	0.85
Cytoplasmic	82	88	0.69
Transmembrane Helix	89	107	0.92
Non-Cytoplasmic	108	112	0.85
Transmembrane Helix	113	133	0.91
Cytoplasmic	134	144	0.78
Transmembrane Helix	145	166	0.91
Non-Cytoplasmic	167	172	0.71
Transmembrane Helix	173	193	0.92
Cytoplasmic	194	207	0.89
Transmembrane Helix	208	229	0.92
Non-Cytoplasmic	230	236	0.88
Transmembrane Helix	237	258	0.91
Cytoplasmic	259	267	0.78
Transmembrane Helix	268	287	0.92
Non-Cytoplasmic	288	292	0.72
Transmembrane Helix	293	311	0.89
Cytoplasmic	312	321	0.84
Transmembrane Helix	322	343	0.89
Non-Cytoplasmic	344	349	0.75
Transmembrane Helix	350	369	0.95
Cytoplasmic	370	381	0.83
Transmembrane Helix	382	402	0.87
Non-Cytoplasmic	403	410	0.63
Transmembrane Helix	411	430	0.90
Cytoplasmic	431	656	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSCSRSSSV RLCVRCTGLS LWCCIGHATS VIKSVRNMQS VIGNGYKRSP TGKESRMTPL  60
   61 TSDFLSSSVV FLSAAVIAVP LAQRAGLGSV LGYLLAGIAI GPWGLGLIRD VQAIMHFAEF 120
  121 GVVLLLFLIG LELNPKKLWN LRGPILGLGG AQVVVTTAVL SSVAYLLGVS WQSALVIGMA 180
  181 LALSSTAIAL RVIEEHGLTR TEAGQSGFAV LLFQDIAVIP MLALLPILAG NSSGDWLNAL 240
  241 WMTGGIAALL LGGHFLLNPL FRYIALSGVR ELFTVAALLL VVGIALLMQK VGLSMALGTF 300
  301 LAGVILAESE FRHELEIAID PFKGLLLGLF FISVGMAVDV GLLLVKPLQI MLAVLGLVIV 360
  361 KGLVLYLLAR LSGTVAKARS KMAAILSQGG EFAFVIFTAA SAEGLLTASQ VSFLLVVVSL 420
  421 SMVTTPLLLS AQKYWFARQL NIEENPLTPD VENKEPRVII VGFGRFGQIV GRLLYANKIK 480
  481 VTILESDASQ VRLLRKYGYK VFYGDATNLE LLRAAGVEQA EALVVCTDDP EQVITIVELC 540
  541 QQHFPNLKLL ARARSRVEAY QLMSLGVQNY TRETFLSALD LGRKALVQLG MHPYQAKRAE 600
  601 EHFHRLDKTM LKELLPQHNE DKQLELRAKE ARTELEEIFS REMDSDQLSR RYWEKE