YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227118916, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQSVDVVII GGGMVGLALA AALKESDLRI AVVENQLPEE ALNPLPDVRV SALSRSSEIV  60
   61 LRNLNAWAGI EARRAAPYIA MEVWEQDSFA RIEFKANEMT QPNLGHIVEN RVIQLALFEQ 120
  121 VQQQANVTLH VPATCQSIAV GESEAWLTLS NGQALSAKLV VGADGANSWL RRQMDIPLTH 180
  181 WDYGHSALVA NVRTSDPHNK VARQIFTAQG PLAFLPMSEP HMSSIVWSTE PSRAEALLNM 240
  241 NDVQFNKALT AEFDARLGRC EVVGERQAFP LKMRYARDFV APRVALVGDA AHTIHPLAGQ 300
  301 GVNLGLLDAA CLAQELLSLW QQNRDIGDER NLRHYERWRK AEAAKMIAAM QGFRDLFEGD 360
  361 NPAKKLIRGI GMRLVGQLPG AKDEIMKRAL GLKGDLPELA KQVWLERAY

Type	Start	End	Confidence
Signal Peptide	1	20	0.72
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	409	0.98