YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11265841
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTFSLILV IVTLVTGIVW TLEKLVWAKK RQQKQAHLQA QTPDMPASAL DKVVAQPWWI  60
   61 ENSVSIFPVI AFVLVLRSFI YEPFQIPSGS MMPTLLVGDF ILVEKYAYGL KDPVWRTQLV 120
  121 ETGKPERGDI VVFKYPVNPE IDYIKRVVGM PGDTVRYSAG KELCIQHQGE SECQAVKLSN 180
  181 VQESEFYQNE IPLIQLNEQL GKVEHNILVN PLSIDNVANY RPRSGVNEWV VPQGHYFVMG 240
  241 DNRDNSADSR FWGFVPEQNL VGKAVAIWIS FEFERAEDSV LPRWIPTGVR FNRVGGIH

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.46
Transmembrane Helix	7	27	0.54
Cytoplasmic	28	57	0.55
Transmembrane Helix	58	80	0.48
Non-Cytoplasmic	81	298	0.85