YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227082480, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.68
Transmembrane Helix	12	35	0.87
Cytoplasmic	36	55	0.66
Transmembrane Helix	56	74	0.55
Non-Cytoplasmic	75	76	0.57
Transmembrane Helix	77	108	0.68
Cytoplasmic	109	136	0.86
Transmembrane Helix	137	161	0.84
Non-Cytoplasmic	162	174	0.86
Transmembrane Helix	175	197	0.89
Cytoplasmic	198	205	0.86
Transmembrane Helix	206	225	0.95
Non-Cytoplasmic	226	240	0.76
Transmembrane Helix	241	261	0.81
Cytoplasmic	262	299	0.91
Transmembrane Helix	300	320	0.92
Non-Cytoplasmic	321	348	0.90
Transmembrane Helix	349	370	0.92
Cytoplasmic	371	385	0.96
Transmembrane Helix	386	408	0.91
Non-Cytoplasmic	409	415	0.73
Transmembrane Helix	416	435	0.95
Cytoplasmic	436	476	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLINLMND LLWGSILVYL LVGVGIYFTL RLGFIQFRHF THTFTVLKNS RKADNAGISS  60
   61 FQALCTSLAA RVGTGNMAGV AVALTAGGPG AIFWMWLIAM LGMATSFAES TLAQLYKTRD 120
  121 KDGNYRGGPA YYMEKGLGMR WMGVLFSIFL IIAFGLVFNA VQANSITNAM KTAFGFEPML 180
  181 IGIGIVLLTA FVIFGGIRKI ARTAELIVPF MAFAYLAIAL FVVVMNYEKV PDAISLIFKS 240
  241 AFGLQEAAAG GLGYAIAQAM INGVKRGLFS NEAGMGSAPN AAASATPYPP HPASQGYVQM 300
  301 LGVFIDTIVI CTATVAIILM SGEYVPHGEL TGIELTQRAL SSQVGDWGGI FIAFAIFFFA 360
  361 FTSIIANYSY AETNLIFLEH NNKKGLVLFR LVFLGMVMFG SLATLPTVWA MADVSMGLMA 420
  421 IVNLVAILLL SGIVIKLAKD YNRQLDAGKV PTFDANDYPE LKSQLEDGIW DNNKAS