YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|153222238, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	28	0.93
Cytoplasmic	29	41	0.90
Transmembrane Helix	42	63	0.94
Non-Cytoplasmic	64	88	0.95
Transmembrane Helix	89	113	0.80
Cytoplasmic	114	121	0.87
Transmembrane Helix	122	144	0.90
Non-Cytoplasmic	145	176	0.91
Transmembrane Helix	177	198	0.89
Cytoplasmic	199	211	0.85
Transmembrane Helix	212	232	0.93
Non-Cytoplasmic	233	247	0.88
Transmembrane Helix	248	265	0.94
Cytoplasmic	266	273	0.86
Transmembrane Helix	274	294	0.92
Non-Cytoplasmic	295	311	0.78
Transmembrane Helix	312	332	0.94
Cytoplasmic	333	351	0.92
Transmembrane Helix	352	374	0.93
Non-Cytoplasmic	375	392	0.80
Transmembrane Helix	393	412	0.91
Cytoplasmic	413	421	0.86
Transmembrane Helix	422	443	0.91
Non-Cytoplasmic	444	451	0.76
Transmembrane Helix	452	470	0.96
Cytoplasmic	471	490	0.92
Transmembrane Helix	491	511	0.93
Non-Cytoplasmic	512	617	0.98
Transmembrane Helix	618	637	0.93
Cytoplasmic	638	651	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAEIGHFAL IVSLSLAILL SVLPLVGASR NNTLLMNTAR PLAWGMFFLL SISFAVLLWA  60
   61 FYINDFTVQY VASNSNSELP WYYRLTAVWG AHEGSLLLWV LIQAAWTVAV ASFSRGMPQE 120
  121 SVARVLAVMG MITVGFLLFI ILTSNPFLRT LPYFPIDGRD LNPLLQDPGL IIHPPMLYMG 180
  181 YVGFSVAFSF AIASLMTGRL DTAWARWSRP WTTAAWLFLT LGIVLGSWWA YYELGWGGWW 240
  241 FWDPVENASF MPWLAGTALM HSLAVTEKRG TFKAWTVLLA ISAFSLSLLG TFLVRSGILV 300
  301 SVHAFASDPA RGMFILGFLI AVIGGSLLLF AIKGASVRVR GNFELVSREN SLLVNNVLLM 360
  361 TALAVVLIGT LLPLVHKQLG LGSVSIGAPF FNMLFAWLMI PFAFFMGIGP LIRWKRDQIS 420
  421 TLFKPMLITA MASLVLAALM MWLNAPTFSP MAYLGWVMAW WILLLHAYEL HTRATHRHRF 480
  481 IVGVKKLQRS HWAMMLGHVG LAVSIIGIAM VQNYSIERDV RLAPGDNFQL NEYNFYFQGV 540
  541 RDKDGPNYDG YIADFEITSQ GQYVNTLHAE KRFYRTAKSM MTEAAIDRGI TRDLYIAMGE 600
  601 RLDDNRSWAV RIYYKPYVRW IWAGGLLMAI GGALAISDKR YRFRKNAHQE A