YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229342669, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDYEILRLI WWVLIGVLLV GFAITDGFDM GVGALVPIIG KNDNERRVMI NSIAPHWDGN  60
   61 QVWLITAGGA LFAAWPLVYA TSFSGFYLAM IVTLAALWLR PVGLDYRSKI ESTKWRNNWD 120
  121 LAISASGFIP PVIFGVAFGN LLQGVPFQLS DFLMPTYHGS FFGLLNPFAL LCGLVSLFMT 180
  181 LLQGSAWLQM KTTSHVHQRA RNVAQLTGLL TAVCFVAAGF WVQHIDGYMI VGAIDGNAAS 240
  241 NPLNKEVIRE AGAWLHNFEQ VPVLWLAPAL GVLMPLLSVL ASRLDKGGLA FLTSSLGNAG 300
  301 VIFTAGFAMF PFVMPSSLNP AHSLTMWDAT SSKLTLELMT VVAVVMVPII LGYTIWSYYK 360
  361 MFGRLDDKFI EDNKNSLY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.70
Transmembrane Helix	9	28	0.91
Non-Cytoplasmic	29	76	0.70
Transmembrane Helix	77	99	0.87
Cytoplasmic	100	118	0.89
Transmembrane Helix	119	142	0.88
Non-Cytoplasmic	143	160	0.91
Transmembrane Helix	161	182	0.92
Cytoplasmic	183	202	0.88
Transmembrane Helix	203	222	0.96
Non-Cytoplasmic	223	260	0.96
Transmembrane Helix	261	281	0.92
Cytoplasmic	282	289	0.81
Transmembrane Helix	290	313	0.88
Non-Cytoplasmic	314	333	0.93
Transmembrane Helix	334	356	0.91
Cytoplasmic	357	378	0.94