YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229607634, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKARGPFCIR HAAADTFAMV VFCFVTGMII EIFVSGMTFQ QSLASRTLSI PVNIAIAWPY  60
   61 GVFRDYVLRQ GRKISPTGWM KNLSDLVAYV LFQSPVYAAI LFTVGASTDQ IITAVATNAL 120
  121 VSCGMGVLYG YFLDMCRRWF KVPGYTVSEG

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	35	0.85
Non-Cytoplasmic	36	42	0.80
Transmembrane Helix	43	63	0.87
Cytoplasmic	64	82	0.85
Transmembrane Helix	83	104	0.88
Non-Cytoplasmic	105	110	0.78
Transmembrane Helix	111	133	0.92
Cytoplasmic	134	150	0.98