YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9656015, gi\|1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMRQQLSRA TRFVLPLLAA LLCWLAQPVM AEENAKPDVV QKEMTQLAGA DFWRQVRQGE  60
   61 AGYTTSQSPE HGVLISKPGE TWFILKEKWM SPAGAVAIFG SIAMVVLAYI AVGPLMLSKP 120
  121 RTGRKLNRWS RSDRALHWSM AFTFLTLAFS GLMLVYGKHF LKPYIPSELW GWIIYAAKQY 180
  181 HNYMGPLFFI LLMFVLLKWW RKSIFNKVDV QWFMKLGGMV GKYKGTHPSA GFSNAGEKAI 240
  241 YWLLIVFGTF AAISGLVLDF PIFGQTRRDM ELSNLIHMLS ALILICGFIF HIYIGLFGME 300
  301 GALEGMVTGK VDETWAKEHH DLWYEEVKRR GEIEEASTES QPASFNQTKG EVSHESR

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	92	0.99
Transmembrane Helix	93	117	0.90
Cytoplasmic	118	135	0.95
Transmembrane Helix	136	157	0.94
Non-Cytoplasmic	158	179	0.91
Transmembrane Helix	180	200	0.91
Cytoplasmic	201	238	0.88
Transmembrane Helix	239	263	0.87
Non-Cytoplasmic	264	274	0.80
Transmembrane Helix	275	297	0.91
Cytoplasmic	298	357	0.84