YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229529954, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.52
Transmembrane Helix	21	42	0.92
Non-Cytoplasmic	43	51	0.49
Transmembrane Helix	52	70	0.90
Cytoplasmic	71	76	0.46
Transmembrane Helix	77	99	0.88
Non-Cytoplasmic	100	137	0.49
Transmembrane Helix	138	157	0.85
Cytoplasmic	158	162	0.60
Transmembrane Helix	163	182	0.85
Non-Cytoplasmic	183	186	0.53
Transmembrane Helix	187	206	0.92
Cytoplasmic	207	226	0.67
Transmembrane Helix	227	249	0.61
Non-Cytoplasmic	250	274	0.90
Transmembrane Helix	275	297	0.88
Cytoplasmic	298	309	0.84
Transmembrane Helix	310	332	0.85
Non-Cytoplasmic	333	340	0.73
Transmembrane Helix	341	363	0.90
Cytoplasmic	364	373	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMDPATGQN RALFERFHID LPLLLGVLAL MGFGLVVMYS ASGQSLAMMD RQAMRMAMAL  60
   61 IIMVILAQIP PRTYESAAPI LFFCGVILLV CVLLFGEISK GAQRWLDLGF VRFQPSELLK 120
  121 LAVPLMVARY IGKHALPPSF KTLFASLVMV FVPTILIAKQ PDLGTSILIA ASGIFVIFLA 180
  181 GISWKLITAA AVAIGAFVPV LWFFLMHEYQ KTRVRTLFDP ESDPLGAGYH IIQSKIAIGS 240
  241 GGLSGKGWLH GTQSQLEFLP ERHTDFIFAV IAEEWGMIGI LVLLSLYLFI IGRGLYLASH 300
  301 AQTSFGRMMA GSIVLSFFVY VFVNIGMVSG ILPVVGVPLP LISYGGTSMV TLMAGFGILM 360
  361 SIHTHRKAFS KTI