YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229350810, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.95
Transmembrane Helix	114	134	0.90
Non-Cytoplasmic	135	159	0.83
Transmembrane Helix	160	180	0.92
Cytoplasmic	181	190	0.67
Transmembrane Helix	191	211	0.89
Non-Cytoplasmic	212	229	0.88
Transmembrane Helix	230	248	0.89
Cytoplasmic	249	258	0.71
Transmembrane Helix	259	281	0.94
Non-Cytoplasmic	282	303	0.72
Transmembrane Helix	304	324	0.82
Cytoplasmic	325	343	0.67
Transmembrane Helix	344	365	0.87
Non-Cytoplasmic	366	373	0.61
Transmembrane Helix	374	394	0.63
Cytoplasmic	395	402	0.80
Transmembrane Helix	403	426	0.85
Non-Cytoplasmic	427	440	0.80
Transmembrane Helix	441	464	0.91
Cytoplasmic	465	478	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEDMSKIAK QDVTRLIELV GGESNIASVT HCLTRLRFVL NQPEQADKAG LEALSMVKGC  60
   61 FTNAGQFQVV IGTEVDQVYK MLLEQTGKQA VSKDDAKVAA RQNMNVLERG ISHLAEIFVP 120
  121 LLPAIITGGL ILGFRNVIGD IRMFDGKTLT EISQFWASVH AFLWLIGEAI FFFLPVGVCW 180
  181 STVKKLGGTP ILGITLGVTL VSPQLMNAYL IGKEVPEVWD FGLFAIEKVG YQAQVIPAIL 240
  241 AGVALAFIEN NLRRVVPSYL YLVVVPFVSI IVSVVLAHAF IGPFGRVIGD GVAFAAKAAM 300
  301 TGDFAVIGST LFGFMYAPLV ITGIHHTTNA VDLQLMQELG GTPIWPLIAL SNIAQASAVV 360
  361 GIIIISKKQG ERDISVPAAI SAYLGVTEPA MYGINLKYKF PMLSAMIGSA LAAAVCGSAG 420
  421 VMANGIGVGG LPGILSIQPQ FWSIYLVAML IAILVPAALT LLMYKRAQSS GKLAVSAA