YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227117144, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKLANPAP LGLMGFGMTT ILLNIHNAGF FPIDSMILAM GIFYGGLSQV IVGIMCFKRG  60
   61 DTFGTTAFTS YGLFWLTLVG LIVMPHMGLP ASPAPFMGWY LALWGIFTGF MFIGSLCYPT 120
  121 AKQVVFGSLT ILFALLAARD FTGSELIGTI AGFEGIFCGA SAIYFAMAQV LNNEYGRVVL 180
  181 PIGEKRVQPV KAQELAA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	30	0.88
Non-Cytoplasmic	31	35	0.85
Transmembrane Helix	36	57	0.93
Cytoplasmic	58	66	0.84
Transmembrane Helix	67	89	0.88
Non-Cytoplasmic	90	95	0.88
Transmembrane Helix	96	117	0.88
Cytoplasmic	118	123	0.72
Transmembrane Helix	124	142	0.80
Non-Cytoplasmic	143	146	0.70
Transmembrane Helix	147	168	0.86
Cytoplasmic	169	197	0.80