YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229519960, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.51
Transmembrane Helix	7	27	0.64
Cytoplasmic	28	52	0.82
Transmembrane Helix	53	74	0.73
Non-Cytoplasmic	75	78	0.62
Transmembrane Helix	79	99	0.86
Cytoplasmic	100	125	0.84
Transmembrane Helix	126	150	0.87
Non-Cytoplasmic	151	159	0.87
Transmembrane Helix	160	181	0.90
Cytoplasmic	182	189	0.84
Transmembrane Helix	190	211	0.94
Non-Cytoplasmic	212	235	0.94
Transmembrane Helix	236	256	0.91
Cytoplasmic	257	272	0.90
Transmembrane Helix	273	297	0.89
Non-Cytoplasmic	298	320	0.89
Transmembrane Helix	321	344	0.91
Cytoplasmic	345	364	0.96
Transmembrane Helix	365	386	0.85
Non-Cytoplasmic	387	393	0.59
Transmembrane Helix	394	414	0.88
Cytoplasmic	415	421	0.79
Transmembrane Helix	422	440	0.97
Non-Cytoplasmic	441	448	0.70
Transmembrane Helix	449	470	0.89
Cytoplasmic	471	494	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWFLTCVAA LVGGYFIYGA FVEKVFGINE KRQTPAHTKT DGVDYVPMST PKVYLVQLLN  60
   61 IAGVGPIFGP IMGALYGPAA MLWIVVGCIF AGAVHDYFSG MLSIRNGGAS VPSITGRYLG 120
  121 NGAKHFMNIF AIVLLLLVGV VFVSAPAGMI TNLINQQTDF TVSMTTMVVI IFAYYILATI 180
  181 VPVDKIIGRF YPLFGALLIF MSVGLMTAIA FSSEHQVLGG FEISDMVKNL NPNDMPLWPA 240
  241 LFITIACGAI SGFHATQSPL MARCMENEKN GRFVFYGAMI GEGIIALIWC TVALSFFGSL 300
  301 EALSEAVKNG GPGNVVYGAS FGLLGVFGGV IAFLGVVILP ITSGDTAFRS SRLILAEYFN 360
  361 MEQKTLRNRL LMAVPLFVIG AVLTQVDFGI IWRYFGFANQ ATAVMMLWTA TAYLMRHNKL 420
  421 HWICTVPALF MTTVCISFIL NSSTLGFGLP MQISTIAGVL ASLGALAYVA KVSKGKGETD 480
  481 LADEEKPQGV TKTA