YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|121546650, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRILVNDLG GCNPYLEKKL NFQRILLVRC FFSQIRAQSL ILASFYFVLS CAYCIFAFLI  60
   61 LNRMIEPIMS PYLTFDRQHW AQLRNSVPMT LSESDLKELQ GINDHLSMTE AVEIYLPLAR 120
  121 LLNLYVAARQ SRNGVLHQFL GNTESAPPFV IGIAGSVAVG KSTTARLLKA LLSRWENHPK 180
  181 VELITTDGFL YPNKVLTERG IMHKKGFPES YDIRRLVEFV SEVKAGQPNV TAPVYSHLTY 240
  241 DITDEMKVVD RPDVLIIEGL NVLQSGMDYP HDPHRVFISD FLDFSIYVDA DSQLIEKWYI 300
  301 ERFMKFRQGA FKKPGSYFSH YTALTEAQAE QKARSIWETI NGKNLVENIL PTKGRAHLIL 360
  361 RKGLNHTVEE VLLRK

Type	Start	End	Confidence
Cytoplasmic	1	38	0.91
Transmembrane Helix	39	61	0.90
Non-Cytoplasmic	62	375	0.74