YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229354600, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	31	0.89
Non-Cytoplasmic	32	39	0.72
Transmembrane Helix	40	58	0.94
Cytoplasmic	59	70	0.83
Transmembrane Helix	71	92	0.91
Non-Cytoplasmic	93	131	0.93
Transmembrane Helix	132	156	0.86
Cytoplasmic	157	181	0.87
Transmembrane Helix	182	201	0.94
Non-Cytoplasmic	202	232	0.93
Transmembrane Helix	233	253	0.94
Cytoplasmic	254	271	0.88
Transmembrane Helix	272	290	0.96
Non-Cytoplasmic	291	329	0.88
Transmembrane Helix	330	352	0.86
Cytoplasmic	353	390	0.91
Transmembrane Helix	391	412	0.93
Non-Cytoplasmic	413	420	0.76
Transmembrane Helix	421	445	0.73
Cytoplasmic	446	453	0.75
Transmembrane Helix	454	478	0.86
Non-Cytoplasmic	479	481	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLRPITFI IGLVLSKLAL FMYVPTLVAF FTGSGGFLDF AQAVIITHLV AFLCLSIGRT  60
   61 EHFRLNVRDM FLITSLVWTI ASAFAALPFV FINHISFTDA YFETMSGLTT TGSTVLSGLD 120
  121 DMPPSILLWR SILQWLGGVG FIVMAVAVLP MLNVGGMKLF QTESSDWSDK SSPRAKTVAK 180
  181 NIVAVYLVLT GLCFLSYIAT GMTPFEAINH AFTTLSTGGY STSDSSMNRF SHGAHWVGTL 240
  241 FMFLGGLPFL LFVQALRKQS ARALLKDEQV RGFFWLFMIS SLLVAGWLWL KNDYAILDAL 300
  301 RVSMFNIVSV VTTTGYGLDD FTAWGALPST IFAFLLMAGA CSGSTSGGIK VFRFQIAMAL 360
  361 LKKQLLNLIH PSGIFIQRYN KRPVNEEIIR SVVAFGLTFF ITIVVLAGAL SAMGLDSVTS 420
  421 ISGAVTAVAN VGPGMGSIIG PTGNFAPLPD AAKWLLSFGM LMGRLEILTI LVLFFPAFWR 480
  481 H