YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tr\|Q87UQ8\|Q87UQ8...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	44	0.93
Non-Cytoplasmic	45	62	0.91
Transmembrane Helix	63	84	0.89
Cytoplasmic	85	93	0.88
Transmembrane Helix	94	113	0.96
Non-Cytoplasmic	114	119	0.71
Transmembrane Helix	120	138	0.93
Cytoplasmic	139	157	0.86
Transmembrane Helix	158	179	0.92
Non-Cytoplasmic	180	186	0.82
Transmembrane Helix	187	207	0.94
Cytoplasmic	208	253	0.96
Transmembrane Helix	254	273	0.92
Non-Cytoplasmic	274	293	0.92
Transmembrane Helix	294	312	0.94
Cytoplasmic	313	321	0.83
Transmembrane Helix	322	341	0.96
Non-Cytoplasmic	342	350	0.82
Transmembrane Helix	351	373	0.90
Cytoplasmic	374	382	0.85
Transmembrane Helix	383	404	0.91
Non-Cytoplasmic	405	414	0.72
Transmembrane Helix	415	435	0.93
Cytoplasmic	436	449	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGFFRPARH QAPLPEEKVD STYRRLRWQI FAGIFIGYAG YYLLRKNFSL AMPYLIDEGY  60
   61 TRGQLGVAMS AIAIAYGLSK FLMGIISDRS NPRYFLPFGL LVSAGIMFIF GFAPWATSSV 120
  121 TIMFVLLFIN GWAQGMGWPP SGRTMVHWWS QKERGGVVSV WNVAHNVGGG LIGPLFLLGM 180
  181 GWTNDWHAAF YVPAAVALLV AVFAFATMRD TPQSVGLPPI EHYKNDYPEG YDESHEEEFS 240
  241 AREIFVKYVL RNKFLWYIAM ANVFVYLLRY GVLDWAPTYL KEAKHFTVDK TSWAYFLYEW 300
  301 AGIPGTLLCG WMSDKIFKGN RGLTGMVFMF LVTIATLVYW LNPEGNPTVD MIALVSIGFL 360
  361 IYGPVMLIGL QALELAPKKA AGTAAGFTGL FGYLGGSVAA SAAMGYTVDH FGWDGGFVLL 420
  421 IGACILAMVF LAPTLRHKQV ASTSRDIKR