YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28872269, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADIPENDQ QMPLISHLTE LRTRLLRCVA AVFLIFAGLF YFTQKIYTLV SAPLRVYLPE  60
   61 GATMIATDVA SPFITPFKLT MMVALFLSMP VILHQIWGFI APGLYKHEKR VAIPLLVSSI 120
  121 ILFYAGMAFA YFLVFPIIFH FFASVTPEGV SMMTDIASYL DFVMTLFFAF GVAFEIPVAV 180
  181 VLLVWIGIVD VKYLKKIRPY VIIGCFVVGM ILTPPDIFSQ TLLAVPMWLL FELGILCSSM 240
  241 IRKRGEHPDD ETEDADKQDQ PPATTP

Type	Start	End	Confidence
Cytoplasmic	1	24	0.95
Transmembrane Helix	25	43	0.95
Non-Cytoplasmic	44	78	0.90
Transmembrane Helix	79	101	0.87
Cytoplasmic	102	114	0.84
Transmembrane Helix	115	143	0.79
Non-Cytoplasmic	144	165	0.89
Transmembrane Helix	166	188	0.94
Cytoplasmic	189	196	0.89
Transmembrane Helix	197	215	0.90
Non-Cytoplasmic	216	221	0.62
Transmembrane Helix	222	241	0.76
Cytoplasmic	242	266	0.83