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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28871052, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSSGLIAA VALSYMAIMF AIAFYGDRYS ASLRPTMRAW VYSLSLAVYC TSWTFFGAVG  60
   61 QAAEQLWSFL PIYLGPIVLM VLAPWVLQKM VLISKQENIT SIADFIAARY GKSQSLAVMV 120
  121 ALICLIGMLP YIALQLKGIV LGVNILIGAV ADSTGTRAQD TALVVSLILA LFTIVFGARN 180
  181 LDVTEHHRGM VLAIAFEALV KLFAFMAVGV FVTFGLYDGF DDLFNQAKLA PRLEEYWQDT 240
  241 INWPSMFVQT GVAMMAIVCL PRQFHVTVVE NIEPQDLNLA KWVFPAYLAL AALFVVPIAL 300
  301 AGQMLLPASM LPDSFVISLP LAHAHPSLAL LAFIGGASAA TGMVIVACVA LSTMISNDML 360
  361 LPWLLRRKNT ERPFEAFRYW MLSVRRISIV MILLLAYVSY RMLGSTASLA TIGQIAFAAI 420
  421 TQLAPAMFGA LYWKQANRRG VFAGLAAGIF IWFYTLVLPV AAHGMGWSLS TFPLLEWLHS 480
  481 NPFDLPISPM TQGVVLSMAG NCTLFAWVSM LSRTRVSEHW QAGRFIGQET QGRDYSRPLL 540
  541 SVQIEDLLSL SARFVGEDRA RQSFIRFAYR QGKGFNPSLN ADGEWIAHTE RLLAGVLGTS 600
  601 STRAVVKAAI EGRDMQLEDV VRIADEASEV LQFNRALLQG AIENITQGIS VVDQSLRLVA 660
  661 WNRRYLELFN YPEGLISVGR PIADIIRYNA ERGLCGPGEA EVHVARRLHW MRQGRAHTSE 720
  721 RLFPNGQVIE LIGNPMPGGG FVMSFTDITE FRAAEQALKG VNESLEQRVA ARTHELSQLN 780
  781 QALTEAKGTA EAANESKTRF LAAVSHDLMQ PLNAARLFSA ALSHQQDDIS SEAQQLVQHL 840
  841 DSSLRSAEDL ISDLLDISRL ENGKITPDCQ PFSLNVLYDT LGAEFKALAQ EQGLKFRVRG 900
  901 SSLRIDSDIK LLRRILQNFL TNAFRYAKGP ILLGVRRCGD SLSLEVWDRG PGIPEDKRKV 960
  961 IFEEFKRLDS HKTHAAKGLG LGLAIADGLC RILEHPLQVR SWTGKGSVFS VRVPLAAAQA1020
 1021 PMPVLQTEVS RPALNGTQVL CIDNEDSILI GMNSLLTRWG CQVWTARNRQ ECEALLNNGV1080
 1081 RPQIALVDYH LDEGETGTEL MAWLRTRLGQ PVPGVLISAD GRPELIAQVH AAGLDYLPKP1140
 1141 VKPAALRALL SRHVNLD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle