YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31433687, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.84
Transmembrane Helix	29	50	0.67
Non-Cytoplasmic	51	63	0.64
Transmembrane Helix	64	86	0.85
Cytoplasmic	87	95	0.79
Transmembrane Helix	96	116	0.88
Non-Cytoplasmic	117	126	0.77
Transmembrane Helix	127	148	0.93
Cytoplasmic	149	168	0.91
Transmembrane Helix	169	190	0.89
Non-Cytoplasmic	191	196	0.70
Transmembrane Helix	197	217	0.94
Cytoplasmic	218	226	0.90
Transmembrane Helix	227	248	0.94
Non-Cytoplasmic	249	268	0.96
Transmembrane Helix	269	290	0.92
Cytoplasmic	291	302	0.81
Transmembrane Helix	303	322	0.87
Non-Cytoplasmic	323	356	0.67
Transmembrane Helix	357	378	0.86
Cytoplasmic	379	387	0.67
Transmembrane Helix	388	408	0.65
Non-Cytoplasmic	409	415	0.56
Transmembrane Helix	416	437	0.86
Cytoplasmic	438	458	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDDLNHHL IAVGVGEEAA TAHCGLRTLV RNMAQLVVSL GILVAADKLV EQAFAAASIK  60
   61 FPSALFAMFC VFALLLFLPP SLANGFMAFF DPATVFIHRW LPLFFVPSLV VLPLAVRDVS 120
  121 PASALKILFI TFGGWFASLV VAGYTALSVR RIVKTQLIPA EPMKRPSPFG PLEFWAWAAV 180
  181 FVASFAVAYV SPTALGTTAT TCLPFLLAST VFGYILGSRL PSGVKKVLHP IICCALSADL 240
  241 AAVAYGYLSR SGVDAVLGDY LTESPSNPGA GDILMGFLGS VIISFAFSMF NQRKLVRRHA 300
  301 AEIFTSIAVA STFSLYSTAI LGRVVELEPI LTISILPRCI TVALALRVVS LFEGVNTSVT 360
  361 AAVVVLTGLI GANFAQAVMD KLRLKDPIAR GIGTASSAHG LGTAAVSAKE PEALPFCAIA 420
  421 YALTGVVASL FCSLPAIRHS LVFIAGDASA SQTQHFSY