YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28853237, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLTAKDFA PELLELYDYY AHGKINRREF LDRAALFSLG GLTAGALLAS LSPDYALATQ  60
   61 IEFTDPDIIA EYVSYPSPKG HGQVRGYLVR PAKATGKVPA IVVAHENRGL NPYIEDVARR 120
  121 VAKAGFIALA PDGLSSVGGY PGNDDKGREL QQKVDPEKLM NDFFAAIEWL MKHDATTGKV 180
  181 GITGFCYGGG VTNAAAVAYP ELGAAVSFYG RQPNAEDVVK IKAPVMIHYG ELDTRINEGW 240
  241 PAYEKALKAA GTTYETYIYP GANHGFHNDS TPRYDEAAAK LAWERTLGWF NKYLV

Type	Start	End	Confidence
Cytoplasmic	1	33	0.76
Transmembrane Helix	34	53	0.73
Non-Cytoplasmic	54	295	0.98