YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28852967, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWIADPTAW LGLLTLIVLE LVLGIDNLVF IAILADKLPP EQRDKARVIG LSLALIMRLG  60
   61 LLASISWMVT LTEPLFEIFD KTFSGRDLIM LFGGVFLLFK ATMELHERLE GHVAQRAGNA 120
  121 GYALFWPIVA QIVVLDAVFS LDAVITAVGM VEHLSVMMIA VIFSIGLMMI ASKPLTKFVN 180
  181 SRPTVIMLCL GFLMMIGFSL TAEGLGFHIP KGYLYAAIGF SILIEVFNQI ARKRNKKSAH 240
  241 GHLPRRERAA HAVMRLLGGR RLESGDVDEE ITDMLEGESN EPVFDRRERV MISGVLQLAE 300
  301 RQIRTVMTPR AEIDYIDLND DAEKIRLKLM HSSYSRLPLI GERGIDEPLG FVHKKELFKE 360
  361 LLSGNQPDLK LMSRKAINLL ESFTILNALE QMRKESTHIA FVVNEFGDFI GVLSMTDILE 420
  421 SIAGQLPDAS EVEGPDIVAQ GEDFVVSGAL NLSLIRERTG FQAKATEDYQ TLAGLVMSLL 480
  481 DRLPSTGDSL SWQGWNLQVV GVEERRVTRV LLQKQPAASA GK

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.94
Transmembrane Helix	9	34	0.84
Cytoplasmic	35	47	0.92
Transmembrane Helix	48	71	0.87
Non-Cytoplasmic	72	82	0.90
Transmembrane Helix	83	103	0.88
Cytoplasmic	104	121	0.86
Transmembrane Helix	122	141	0.90
Non-Cytoplasmic	142	152	0.64
Transmembrane Helix	153	171	0.94
Cytoplasmic	172	183	0.77
Transmembrane Helix	184	202	0.95
Non-Cytoplasmic	203	211	0.69
Transmembrane Helix	212	231	0.90
Cytoplasmic	232	522	0.96