YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110289622, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKDVSPLV TVPPAPAAAA PPPAAAPAPP PSQPPPPPLP FAQQAPPPAA NPAAAPMRLS  60
   61 FDQMAGKAPG GEQQHHHHPG PMLYAAAPAG GAAPPPQGGN VMGMGELMRK KRGRPRKYAP 120
  121 DGSMALALAP ISSASGGAAP PPPPPGHQPH GFSISSPASD PNAKRRGRPP GSGKKKQFEA 180
  181 LGSWGIAFTP HILTVKAGED VASKIMAFSQ QGPRTVCILS ANGAISNVTL RQPATSGGLV 240
  241 TYEGRFEIIS LSGSFLLAED GDTRSRTGGL SVALAGSDGR VLGGCVAGML MAATPVQVVV 300
  301 ASFIAEGKKS KPVETRKVEP MSAPPQMATY VPAPVASPPS EGTSSGSSDD SGSPINHSGM 360
  361 PYNHSGQQQQ HQQHQHMPPA YASGGWSLSA HHQNRHDSDM KMMSN

Type	Start	End	Confidence
Signal Peptide	1	19	0.55
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	405	0.87