YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213926552, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEREVKKTQ ESLQDRLAQV VDLLQRQRIV EDLTHRQEGQ NQDRVENLVH RQNLVELQRK  60
   61 LEDLHSADVA YILEALPLED RLTVWQLVKA DRDGDILLEV SDSVRETLIA DMDDHELLAA 120
  121 ARDMDADELA DLAPELPRDV VHELMEALDS QQRERVRSAL SYDEDQVGAL MDFEMVTIRE 180
  181 DVSLEVVLRY LRRLKELPGH TDKLFVVDSE GVLKGVLPIK RLLVNDPEKQ VGEVMANDPV 240
  241 SFHPEDDAYD AAQAFERYDL ISTPVVDKNG KLIGRLTIDE IVDLIREESE NEVLNMAGLR 300
  301 EEEDIFASVW RSLRNRWAWL AVNLVTAFLA SRVIGLFEGS IEKLVALAAL MPIVAGIGGN 360
  361 SGNQTITMIV RAMALDQVNT GNTSRLLRKE LAVGLINGLL WGGVIGVVAY LLYGSWSLGV 420
  421 VMTAAMTLNL LLAALMGVSI PMALARLGRD PAMGASVMIT AMTDSGGFFI FLGLATIFLL 480
  481

Type	Start	End	Confidence
Cytoplasmic	1	316	0.95
Transmembrane Helix	317	336	0.94
Non-Cytoplasmic	337	343	0.81
Transmembrane Helix	344	364	0.87
Cytoplasmic	365	390	0.88
Transmembrane Helix	391	413	0.91
Non-Cytoplasmic	414	420	0.79
Transmembrane Helix	421	444	0.87
Cytoplasmic	445	454	0.82
Transmembrane Helix	455	478	0.89
Non-Cytoplasmic	479	480	0.83