YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28851986, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALYMILGT LVALGVLVTF HEFGHFWVAR RCGVKVLRFS VGFGTPLLRW SDRQGTEYVV  60
   61 AAIPLGGYVK MLDEREGNVP PELADQSFNR KTVGQRIAIV IAGPTANFLL AIAFFWVLAM 120
  121 MGSEQVRPVI GAVESGSIAQ QAGLTAGQEI VAVDGEPTSG WAGVNLQLVR RLGESGTIAL 180
  181 KVRDQGSTVD TSRELVLSDW LKGAEEPDPI KSLGIRPWRP ALLPVLAEID PKGPAQSAGL 240
  241 KTGDRLISMD GQPLNEWQQV VDRVRERPEA KVSLRIERDA VQMDVPVTLA ARGEGKAAAG 300
  301 YLGAGVKAVD WPPEMLREVS YGPFAAMVEG VKRTWTMSVL TLDSLKKMLF GELSVKNLSG 360
  361 PITIAKVAGA SAQSGLGDFL NFLAYLSISL GVLNLLPIPV LDGGHLLFYL IEWARGRPLS 420
  421 EKVQGWGAQI GISLVVGIML LALVNDLGRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.67
Transmembrane Helix	7	29	0.84
Cytoplasmic	30	96	0.72
Transmembrane Helix	97	120	0.90
Non-Cytoplasmic	121	382	0.67
Transmembrane Helix	383	409	0.70
Cytoplasmic	410	424	0.58
Transmembrane Helix	425	444	0.95
Non-Cytoplasmic	445	450	0.57