YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31432828, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.56
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	142	0.57
Transmembrane Helix	143	167	0.75
Cytoplasmic	168	172	0.43
Transmembrane Helix	173	193	0.91
Non-Cytoplasmic	194	200	0.42
Transmembrane Helix	201	224	0.91
Cytoplasmic	225	243	0.47
Transmembrane Helix	244	276	0.80
Non-Cytoplasmic	277	295	0.79
Transmembrane Helix	296	315	0.94
Cytoplasmic	316	323	0.87
Transmembrane Helix	324	344	0.91
Non-Cytoplasmic	345	360	0.87
Transmembrane Helix	361	380	0.95
Cytoplasmic	381	386	0.85
Transmembrane Helix	387	409	0.89
Non-Cytoplasmic	410	415	0.77
Transmembrane Helix	416	433	0.92
Cytoplasmic	434	440	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPAAAASLH VLVLPPLPPP GCRTRRAAPV LARRGRGVRH AARRDTPPNP VDAVDCVGTG  60
   61 ADVECYVDDR PGAEVGPIRR EATPPPSPQD AVDCVGTGTD VECFVDGPGA GAGVGAEPLL 120
  121 ARVSEEEEDG VSASAAALVG REWWEWASLV SPFFFWGTAM VAMKGVIPKT GPFFVAALRL 180
  181 LPAGALLVAF AAARGRRQPS GWAAWVAVAA FGLVDAACFQ GFLAEGLQKT SAGLGSVIID 240
  241 SQPLTVAVLA ALLFGESIGA IGVGGLVLGV VGLLLLEVPA LSVEGNDTAI WGSGEWWMFL 300
  301 SAQSMAVGTI MVRWVSKYSD PIMATGWHMI IGGLPLLVIS VLNHDPALNG HLQELTLNDV 360
  361 LALLYTSIFG SAISYGVYFY NATRGSLTTL SSLTFLTPMF ASIFGFLYLG ETFSPVQLGG 420
  421 ALLTLVAIYM VNYKSIVGEK