YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28868145, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKAVKVIV YTWEGVDKKG TKTSGELSGH NLALVKAQLR KQGINPTKVR KKSVSIFGKG  60
   61 KKIKPLDIAF FSRQMATMMK AGVPLLQSFD IISEGAENPN MRTLVDSLKQ EVSAGNSFAT 120
  121 ALRRKPEYFD ELFCNLVDAG EQAGALESLL DRVASYKEKT EKLKAKIKKA MTYPAAVLIV 180
  181 AVIVSGILLI KVVPQFQSIF ASFGADLPAF TLMVIGLSDI VQKWWLIIVI AFFATIFMLK 240
  241 RAYKKSQNFR DALDRFLLKL PIIGPLIFKS SVARYARTLA TTFAAGVPLV EALDSVAGAT 300
  301 GNVVFKNAVN RVKQDVSTGM QLNFSMRSTG VFPSLAIQMT SIGEESGALD AMLDKVATYY 360
  361 EEEVDNMVDN LTSLMEPMIM AILGVIVGGL VIAMYLPIFK LGNVV

Type	Start	End	Confidence
Cytoplasmic	1	170	0.98
Transmembrane Helix	171	193	0.91
Non-Cytoplasmic	194	219	0.89
Transmembrane Helix	220	239	0.90
Cytoplasmic	240	376	0.65
Transmembrane Helix	377	399	0.90
Non-Cytoplasmic	400	405	0.51