YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28868144, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLDLLASS PLAFVTTCCL LGLIVGSFLN VVVYRLPKMM ERDWKVQSRE MLGLPAEPDQ  60
   61 PVFNLILPHS SCPHCAHKIR PWENLPVISY LLLRGKCSQC KAPISKRYPV VELTCAVLSA 120
  121 YVAWHFGFGW QAAAMLVLSW GLLAMSLIDA DHQLLPDSLV LPLLWLGLIV NAFGLFTSLS 180
  181 DALWGAVAGY LTLWSVFWLF KLVTGKEGMG YGDFKLLAML GAWGGWQILP LTILLSSLVG 240
  241 AVLGVIMMRV RRVESGTPIP FGPYLAIAGW IALLWGGQIT DSYMQFAGFR

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.89
Transmembrane Helix	12	34	0.94
Cytoplasmic	35	120	0.91
Transmembrane Helix	121	148	0.72
Non-Cytoplasmic	149	157	0.60
Transmembrane Helix	158	177	0.88
Cytoplasmic	178	182	0.61
Transmembrane Helix	183	202	0.82
Non-Cytoplasmic	203	225	0.82
Transmembrane Helix	226	247	0.93
Cytoplasmic	248	258	0.76
Transmembrane Helix	259	279	0.90
Non-Cytoplasmic	280	290	0.89