YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31433449, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWWPPAAWR RWGVVVVVVA ALMAVSATAA VEEELGGRES GVVAAAAQGR WPRHRHAYAA  60
   61 MMYMGTPRDY EFYVAVRVMM RSLARIGADA DRVLIASADV PADWVRAMRE EDGMRVVLVE 120
  121 NMKNPYESNL GGINRRFKLT LNKLYAWTLV DYERVVMIDS DNIFLQKTDE LFQCGQFCAV 180
  181 FINPCYFHTG LFVLQPSMDV FKGMLHDLEI GRANSDGADQ GFLVGCYPDL LDRPMFHPPE 240
  241 NGSKLNGTYR LPLGYQMDAS YYYLKLHWHV PCGPNSVITF PSAPWFKPWY WWSWPILPLG 300
  301 LSWHKQRWDD LGYAAEMPVI LMEILMYAVI ITITRLAKPG MTKLCYNRRP EKQNAMVQGL 360
  361 IKMSAIVAML IAYAIPFFII PRTVHPFMGW SMYLFGALAL GVLVSNAFLL PLLAVLTPWL 420
  421 AIIGMFFVMA FPWYHGGIVR VLAIFGYAFC SAPFLWASLV RVMDSLQTML EREPFFPRLG 480
  481 EPAQETEFSK LF

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	313	0.84
Transmembrane Helix	314	337	0.82
Cytoplasmic	338	357	0.89
Transmembrane Helix	358	380	0.91
Non-Cytoplasmic	381	386	0.82
Transmembrane Helix	387	409	0.84
Cytoplasmic	410	414	0.61
Transmembrane Helix	415	434	0.88
Non-Cytoplasmic	435	440	0.66
Transmembrane Helix	441	460	0.93
Cytoplasmic	461	492	0.88