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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|31433404, gi|...
Protein type: Transmembrane
Type Confidence: 0.50
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLFVSGGL GAPDFYPQTL SCAEETLTKE YVQSGYKDTV EGIEEAREIV LSQIPYLSKP  60
   61 DIATKCKEAL KKRFRAINES RAQKRKAGQV YGVPLSGSLL TKPGMYPEQM HSNEDTRRKW 120
  121 IEALVQPNRR LWSLAEQVPR GFRRKLLFNY LIRYNVPLLR ASWLVKVTYL NQVQTSSNNV 180
  181 SSAAPDSLRS QHWTKDVIEY LQLLLDELCS KNGFFGLPSS QEQSLPCLVA GDSPIKLKTG 240
  241 ASPASADVEE PSLHFKWSYM IRIVQCHLME QLLVPSLLIE WVFNQLQERD STEVLELLLP 300
  301 IVLSLVDTIT LSQTYIHMLV EILIQRLSDA SPGSLSVKNN PKRSSITSAL VELLQYLILA 360
  361 VPDTFVSLDC FPLPSVVAPD VYGKGALLKI AGGGKIASSR RQNASRHLSC GYAICSVQRR 420
  421 ASDLSLVANP NLQVRGAANV VQALDKALVT GNLTAAYTSV FNYLSDTLME ETWIKEVSPC 480
  481 LRSSLMWMGA VELSLVCSVF FICEWATCTF RDCRTSQCQN VKFSGSKDFS QVYMAVSLLK 540
  541 DKMNEINNLS SSKSSSQLAM KDHLKSATLN HSSIKVTAME TASGFRDSTG SIDENNKKDI 600
  601 FSSPGPLHDI IVCWLDQHEI SDASGFKSVD VFMTELIRSG IFYPQTYVRQ LIVSGITIWN 660
  661 DSLFDLEKKT RHYKILKHLP GFCLFNILEE AKIAEDQVLY EIVSTYSSER RLVLSELSSG 720
  721 LATDANVEGR VPLSSCLQKQ PDLLMDSTDD NHGRVAVQVE EVKLMISGLL NLGYSTLLAE 780
  781 SGREETKKTK KGQTDLVDSE EDVGHAKTGC KDSSRTKRQK LDKNVFPFQG SPLVQSDEED 840
  841 FWWVRKEQKQ ELFTVETIHQ SIEQTSGGKA TVVQKTQNIA QLAAARIDGS QGASTSHVCD 900
  901 NNLSCPHHKP GTNSDILKDA DHMSMLTLAE VGKSLKRLRL LERRSISIWL LKSIKQLIEG 960
  961 DEVKHSKANN SISASTVQHS GKIASGWRFG EDELLSVLYI MDTCCDLLSS VRLLIWLLSK1020
 1021 IYIGRTTSGQ VGRGVMHPKH KENQVFQVAE AFLFSSLLRY ENILIAMDLL PEVLSVSMNR1080
 1081 TVHKSGERQS TSVAFAYARY FLRKYRDVTS VARWERNFRS TSDKRLLAEL DSGKSITGDS1140
 1141 IISGISSDCI RQNGGANPDG DHSLVASAVS AIVDNAGHAI AKHLDISGGN NPGVTSINSL1200
 1201 NLIQHILDIH INSLALLRET LGDRFSRIFE ISLAVEASSA VAASFAPPKA HRSQQSSETH1260
 1261 DESGNHANEV PSNPSKCFNV KAVKVSAAVS ALVVGAIIYG VVSLERMMVV LRLKEGLDIL1320
 1321 QFLRISKAST NGVTHSIGNF KIDSSTEVLV HWFKILIGNC KTVYNGVIAE ILGDSYVLAF1380
 1381 SRLQRTLPLG IVLPPAYSIF AMVLWRPYLY DTSTSNHEDI QLYQSLLGAI SDITRHQPFR1440
 1441 DVCFRNMHLF YDLLAADVGD SEFAAIVELR SPDECLKALS PLRARVFLNA LLDCEIPVTM1500
 1501 RDDGTYALEP GCAEASTKND VKFPERLIEI LNVLQPAKFH WQWVELRLLL DEQSLIEKPK1560
 1561 NVPYVKALRS LSPNAENFTL SEREKGLTEV ILSRLLVRPD AAPLYSELIH LLGKLQESFV1620
 1621 MGIKWFLQGQ DVLLGNNSVR QQLVNLTQRK GFPMKTQFWK PWGWSKLVGY ANANKSSKRK1680
 1681 LEVTSIEERE VDGLIDSRKS SNRKSLNVGT SPEGHGSTQK YFTQEALAEL VLPCIDRSSS1740
 1741 EFRFVFAGDL IKHMGVISEH IKAAVWNGIN KLNSSNPSGN EGLSKPNGRK GIFSGSPNIR1800
 1801 KHSPVPNDST TPSASALRSS IWLRLQFIIR LLPVIIADSN MRQTLASSLL SLVGTRVVYE1860
 1861 DADSLEPYMD DVLLDCPSES LFDRLLCVLQ ALLGNSQPSW LKTKPSSKPA VKFLRDLSAI1920
 1921 DKEVTKSLQC ALDRMELPAT IRRRIQVAMP ILPTSRLSSI TCGPPLLSSA ALSPFQCSTS1980
 1981 AAGPHQQFPL NWIPTNLSRR CKAALPSQDP NMEIDPWTLL EDGTSCPNTN SGSNSANGVT2040
 2041 GDHANLKACS FLKDSVRVRR TDLTYIGSLD EDS

YRC Informatics Platform - Version 3.0
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