YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BI1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFDRKINF DALLKFSHIT PSTQQHLKKV YASFALCMFV AAAGAYVHVV TRFIQAGLLS  60
   61 ALGALALMIC LMATPHSHET EQKRLGLLAG FAFLTGVGLG PALELCIAIN PSILPTAFMG 120
  121 TAMIFTCFSL SALYARRRSY LFLGGILMSA MSLMFVSSLG NLFFGSIWLF QANLYMGLLV 180
  181 MCGFVLFDTQ LIIEKAEHGD KDYIWHCIDL FLDFVTLFRK LMLILAFNEK DKKKEKK

Type	Start	End	Confidence
Cytoplasmic	1	29	0.96
Transmembrane Helix	30	49	0.93
Non-Cytoplasmic	50	55	0.72
Transmembrane Helix	56	75	0.94
Cytoplasmic	76	84	0.88
Transmembrane Helix	85	107	0.90
Non-Cytoplasmic	108	112	0.79
Transmembrane Helix	113	134	0.91
Cytoplasmic	135	139	0.89
Transmembrane Helix	140	163	0.87
Non-Cytoplasmic	164	168	0.68
Transmembrane Helix	169	191	0.82
Cytoplasmic	192	237	0.89