YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LETM2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFYSYNSFL AIFWTRLPGH SVYPSCSHFP SLAFLHLPDS HLRTAYIKNC GSRKYSYPSL  60
   61 TGNNKVHPLR TRLPQKLHTT CWLQHVPGKP QLEQTGKPKA ASPQPTKEAK TETTEEKRSL 120
  121 RQKIVNELKY YYKGFSLLWI DTKVAARIVW RLLHGNALTR RERRRLLRTC ADVFRLVPFM 180
  181 VFIIVPFMEF LIPVFLKLFP DMLPSTFESE SKKEEKQKKT MAAKLEIAKF LQETMTEMAR 240
  241 RNRAKLGDAS SQLSSYVKQV QTGHKPSTKE IVRFSKLFKD QLALEHLDRP QLVALCKLLE 300
  301 LQTFGTNNLL RFQLLMTLKS IKADDEIIAK EGVKALSVSE LQSACRARGM RSLGLTEEQL 360
  361 CQQLTGWLDL HLKENVPPSL LLLSRTFYLI DVKPKPIELP PNIETPKPNL GIPTPPPPES 420
  421 KENLTDSAPQ LKGTKDEEFI QLPPVPSSLI APAATISKEA ILQAKSQETS QNSKADSKGA 480
  481

Type	Start	End	Confidence
Cytoplasmic	1	172	0.89
Transmembrane Helix	173	195	0.87
Non-Cytoplasmic	196	480	0.99