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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116283905, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRVPATLYA CLLGLCALVP RLAGLNICTS GSATSCEECL LIHPKCAWCS KEYFGNPRSI  60
   61 TSRCDLKANL IRNGCEGEIE SPASSTHVLR NLPLSSKGSS ATGSDVIQMT PQEIAVSLRP 120
  121 GEQTTFQLQV RQVEDYPVDL YYLMDLSLSM KDDLENIRSL GTKLAEEMRK LTSNFRLGFG 180
  181 SFVDKDISPF SYTAPRYQTN PCIGYKLFPN CVPSFGFRHL LPLTDRVDSF NEEVRKQRVS 240
  241 RNRDAPEGGF DAVLQAAVCK EKIGWRKDAL HLLVFTTDDV PHIALDGKLG GLVQPHDGQC 300
  301 HLNEANEYTA SNQMDYPSLA LLGEKLAENN INLIFAVTKN HYMLYKNFTA LIPGTTVEIL 360
  361 HGDSKNIIQL IINAYSSIRA KVELSVWDQP EDLNLFFTAT CQDGISYPGQ RKCEGLKIGD 420
  421 TASFEVSVEA RSCPGRQAAQ SFTLRPVGFR DSLQVEVAYN CTCGCSTGLE PNSARCSGNG 480
  481 TYTCGLCECD PGYLGTRCEC QEGENQSGYQ NLCREAEGKP LCSGRGECSC NQCSCFESEF 540
  541 GRIYGPFCEC DSFSCARNKG VLCSGHGECH CGECKCHAGY IGDNCNCSTD VSTCRAKDGQ 600
  601 ICSDRGRCVC GQCQCTEPGA FGETCEKCPT CPDACSSKRD CVECLLLHQG KPDNQTCHHQ 660
  661 CKDEVITWVD TIVKDDQEAV LCFYKTAKDC VMMFSYTELP NGRSNLTVLR EPECGSAPNA 720
  721 MTILLAVVGS ILLIGMALLA IWKLLVTIHD RREFAKFQSE RSRARYEMAS NPLYRKPIST 780
  781 HTVDFAFNKF NKSYNGSVD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle