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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|37535238, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRRHDALRL LLLVVVVAAA DAATEADALL AWKAGLQDGA AALSGWSRAA PVCAWRGVAC  60
   61 DAAAGGARVT SLRLRGAGLG GGLDALDFAA LPALAELDLN GNNFTGAIPA SISRLRSLAS 120
  121 LDLGNNGFSD SIPPQLGDLS GLVDLRLYNN NLVGAIPHQL SRLPKVAHFD LGANYLTDED 180
  181 FAKFSPMPTV TFMSLYLNSF NGSFPEFILK SGNVTYLDLS QNTLFGKIPD TLPEKLPNLR 240
  241 YLNLSINAFS GPIPASLGKL TKLQDLRMAA NNLTGGVPEF LGSMPQLRIL ELGDNQLGGP 300
  301 IPPVLGQLQM LQRLDIKNSG LSSTLPSQLG NLKNLIFFEL SLNQLSGGLP PEFAGMRAMR 360
  361 YFGISTNNLT GEIPPVLFTS WPELISFQVQ NNSLTGKIPP ELGKASKLNI LYLFTNKFTG 420
  421 SIPAELGELE NLTELDLSVN SLTGPIPSSF GNLKQLTKLA LFFNNLTGVI PPEIGNMTAL 480
  481 QSLDVNTNSL HGELPATITA LRSLQYLAVF DNHMSGTIPA DLGKGLALQH VSFTNNSFSG 540
  541 ELPRHICDGF ALDHLTANYN NFTGALPPCL KNCTALVRVR LEENHFTGDI SEAFGVHPKL 600
  601 VYLDVSGNKL TGELSSAWGQ CINLTLLHLD GNRISGGIPA AFGSMTSLKD LNLAGNNLTG 660
  661 GIPPVLGNIR VFNLNLSHNS FSGPIPASLS NNSKLQKVDF SGNMLDGTIP VAISKLDALI 720
  721 LLDLSKNRLS GEIPSELGNL AQLQILLDLS SNSLSGAIPP NLEKLITLQR LNLSHNELSG 780
  781 SIPAGFSRMS SLESVDFSYN RLTGSIPSGN VFQNASASAY VGNSGLCGDV QGLTPCDISS 840
  841 TGSSSGHHKR VVIATVVSVV GVVLLLAVVT CIILLCRRRP REKKEVESNT NYSYESTIWE 900
  901 KEGKFTFFDI VNATDNFNET FCIGKGGFGS VYRAELSSGQ VVAVKRFHVA DTGDIPDVNK 960
  961 KSFENEIKAL TEVRHRNIVK LHGFCTSGDY MYLVYEYLER GSLGKTLYGE EGKKKMDWGM1020
 1021 RVKVVQGLAH ALAYLHHDCN PAIVHRDITV NNILLESDFE PRLCDFGTAK LLGGASTNWT1080
 1081 SVAGSYGYMA PGKNERKKLR SDLFKIVLHI IVIHESTEVI TICRTLKDCH WEKELLKFRQ1140
 1141 VRHRTINTYR LRLFLAEFAY TMRVTEKCDV YSFGVVALEV MMGKHPGDLL TSLPAISSSE1200
 1201 EDDLLLKDIL DQRLDAPTGQ LAEEVVFIVR IALGCTRVNP ESRPSMRSVA QEISAHTQAY1260
 1261 LSEPFKLITI SKLTDYQK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle