YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|13129435
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRAGGDVS PGPALGDNWR QRGPVTLASI AVYCSFHHHP PPPLRSPAPR RPRRPRRPPQ  60
   61 QRTNIATSAI TDLLRPRRPP RQLAQLPRHL RSHLPPRPPS PTPSSRQWQA MGTTSFVFFT 120
  121 IILVVRVLHH HPPLHRLVLR SGCIPTGRPS SRNNKFGPFG FGFIQRQKLG TWNSPFQGAV 180
  181 GDTMKKLSQN YAVGEPLDLA RSPDLASPLF IGSTLVSLSP CKPDTSDLNG IYNNSVHDER 240
  241 GGEKKGWLME GNKSVVAHAK AERGNDGGSW RRAVVVVRRV MVSGCWCRSS TYIISPTPSI 300
  301 FPFPSLGGVN ERREISRLFV SCQDESRLNR GGAAISIWRA EQGTGGDPAF ESNQGLWNSG 360
  361 YYSQLFGIGG VMVTVAILWL STGYFGGIGA PFAPYFWPYL GQLPKKKERK RPVRVYMDGC 420
  421 FDLMHYGHAN ALRQAKLLGD QLVVGVVSDE EIVANKGPPV LSMEERLTLV SGLKWVDEVI 480
  481 PNAPYEITEE FMNTLFNKYN IDYIIHGDDP CLLPDGTDAY ALAKKVGRYK QIKRTEGVSS 540
  541 TDIVVYCDLN VGTVFFFHPG RILLTFKQKE AGSMETTTDA NQNTGATCDK VKSQLSNFLP 600
  601 TSRRIMQFSN GQAPSPGARV VYIDGAFDLF HAGHVEILRS ARQLGDFLLV GVHDDQAIRD 660
  661 RRGYRPIMHL HERTLSVLAC RYVDEVIIGA PWEVSRDMVG IDSYAVPKSM GIFQTITSTK 720
  721 PITTVSVATR IIDNHEAYKC VE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle