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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18542898, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHAPRFLLF LLQLLAASVV ARPPPPERAD SAAVLRSFLA SLPPPSRRVL RPSWRRGGGG  60
   61 GAPHCAFLGV TCDAAGAVAA LNLSGAGLAG ELAASAPRLC ALPALAALDL SRNGFTGSVP 120
  121 AALAACSCIA TLVLSFNSLS GAVPPEILSS RRLRKVDLNS NALTGEIPTT GLAAGSSVLE 180
  181 YLDLCVNSLS GAIPPELAAA LPELTYLDLS SNNLSGPMPE FPPRCGLVYL SLYSNQLAGE 240
  241 LPRSLTNCGN LTVLYLSYNK IGGEVPDFFA SMANLQTLYL DDNAFVGELP ASIGELVNLE 300
  301 ELVVSENAFT GTIPEAIGRC RSLTMLYLNG NRFTGSIPKF IGDLTRLQLF SIADNGITGE 360
  361 IPPEIGKCRG LVEIALQNNS LSGMIPPDIA ELNQLQKLSL FDNILRGPVP LALWRLSNMA 420
  421 VLQLNNNSFS GEIHSDITQM RNLTNITLYN NNFTGELPQE LGLNTTPGLL HIDLTRNHFR 480
  481 GAIPPGLCTG GQLAVLDLGY NQFDGGFPSE IAKCQSLYRV NLNNNQINGS LPADFGTNWG 540
  541 LSYIDMSSNL LEGIIPSALG SWSNLTKLDL SSNSFSGPIP RELGNLSNLG TLRMSSNRLT 600
  601 GPIPHELGNC KKLALLDLGN NFLSGSIPAE ITTLGSLQNL LLAGNNLTGT IPDSFTATQA 660
  661 LLELQLGDNS LEGAIPHSLG SLQYISKALN ISNNQLSGQI PSSLGNLQDL EVLDLSNNSL 720
  721 SGIIPSQLIN MISLSVVNLS FNKLSGELPA GWAKLAAQSP ESFLGNPQLC VHSSDAPCLK 780
  781 SQSAKNRTWK TRIVVGLVIS SFSVMVASLF AIRYILKRSQ RLSTNRVSVR NMDSTEELPE 840
  841 ELTYEDILRG TDNWSEKYVI GRGRHGTVYR TECKLGKQWA VKTVDLSQCK LPIEMKILNT 900
  901 VKHRNIVRMA GYCIRGSVGL ILYEYMPEGT LFELLHRRKP HAALDWTVRH QIAFGVAQGL 960
  961 SYLHHDCVPM IVHRDVKSSN ILMDTELVPK LTDFGMGKIV EDDDLDATVS VVVGTLGYIA1020
 1021 PEHGYYTRLT EKSDVYSYGV VLLELLCRKM PVDPAFGDSV DIVTWMRSNL TQADRRVIME1080
 1081 CLDEEIMYWP EDEQAKALDL LDLAMYCTQL ACQSRPSMRE VVNNLMRMDK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle