YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16924040
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSRGRMLFD LNELPTEAEE EEAAVVVSQP QKTLPVPTAG PSLFPQQEVT QSQGILNNNA  60
   61 FKHAPSGSGF QPFVRSKDSQ ITKEPIKAED NLNASIASTS MLINHSSDGV AKMIGSSNQV 120
  121 SQAVEREEGE WSDADVASDT AGSSVSNKEE LAGTATTQVK RDSQESEPTA VKSGNMIKDE 180
  181 AAAEPSDTEM MDVPKDPVVR GPTGLESTKN LENKGNQLGD DSDLSNKSKD VRGVEANYAL 240
  241 KFASNPSKRP KLDEHKEAML GKKRARQTVF INVEDAKQAG TMKTSTPRRQ SSFPAPIVTR 300
  301 TVKEAFRSGG GIAERAAERQ SQPTIRDQRQ SEMLGSERSN SADPIDQISE SNGDAETGSQ 360
  361 GRPKKMNAEE APADGYQQPM PRQLKGRQIS SQRSVVTGQN TVDQKPVNKR SLVSKKQTPA 420
  421 NNMQYQDTSV ERLIREVTSD KFWHNPEEAE LQCVPKSFES AEEYIRVFEP LLFEECRAQL 480
  481 YSSYEESLES VSRDAHVMVR VKTVERRERG WYDVVVLPMH EYKWTFKEGE VAVLSFPRPG 540
  541 SASQSSRSNR RNVGSNEDTE SECGRLVGTV RRHTPIDTRD PIGAIIHFYL GDSFDSSSET 600
  601 NVLRKLQPRS TWYLTSLGSL ATTQREYVAL HAFRRLNVQM QNAILQPSPE HFPKYEEQPP 660
  661 AMPDCFTPNF ADHLHRTFNG PQLSAIHWAA MHTAAGTSNG AVKKQEPWPF TLVQGPPGTG 720
  721 KTHTVWGMLN VIHLVQYQHY YAALLKKLAP ESYKQVSGNT SNSSETVAAG SIDEVLQSMD 780
  781 QNLFRTLPKL CPKPRMLVCA PSNAATDELL ARVLDRGFID GEMKVYRPDV ARVGVDSQSR 840
  841 AAQAVSVERR TDQLLMKGRD EVIGWLQQLK CREQQLSQEI ALLQRELTMV AAAGRSQGSV 900
  901 GVDPDVLAQR DRSRDFLLQK LAASVESRDK VLVEMSRLLI LESRFRVGSN FNMEDARASL 960
  961 EASFANEAEI VFTTVSSSGR KLFSRLSHGF DMVVIDEAAQ ASEVAVLPPL SLGAARCVLV1020
 1021 GDPQQLPATV ISKAAGTLMY SRSLFERFQL SGCPTILLSV QYRMHPQIRE FPSRHFYQGR1080
 1081 LTDSESVVKL PDEAYYRDAL MAPYIFYDIS HGRESHRGGS SSYQNVHEAQ FVLRLYENLQ1140
 1141 KFLRANGGKK ASVGIITPYK LQLKCLQREF EEVMSTEDGK DIYINTVDAF QGQERDVIIM1200
 1201 SCVRASNHGV GFVADIRRMN VALTRARRAL WVVGNAGALM QSEDWALLIA DAKARKCFMD1260
 1261 LDTIPKDFLA MKISNTPGRN TSNNIRNMRT GGPRPRHLEM LPDSRVSMRP DEDERSNSVP1320
 1321 RNGSYRNLDD LGRPGDRSRD NLPFGMPRRP NSSNGSRREP WTVLDGQGGV YSEDVHLALP1380
 1381 VDGMVMGRCW YSQHQTIDYE TKPLVTMGCK PQIYMHGHFH FENMPGEKQL SLALEQAWSI1440
 1441 SEFLLFGRML VLSSILQAAW MLVSMVVI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle