YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COAE_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVGLTGGI ASGKSTISNL FKASGIPVVD ADIVARNVVQ KGTGGWKKIV EAFGNDVLLE  60
   61 NGEIDRARLG QIVFSDPEKR QVLNRLLAPH ISSGIFWEIL KLWIKGCKVI VLDIPLLFET 120
  121 KMDQWTHPVI VVWVNEATQI ERLMSRDGCS EEQARNRINA QLALDWKKSQ ADIVIDNSGT 180
  181 LDETKEKFQE VLRNVSEPLT WKERLRSRDG LFSVVVCTAV GVLLAQKNLL

Type	Start	End	Confidence
Cytoplasmic	1	209	0.51
Transmembrane Helix	210	225	0.56
Non-Cytoplasmic	226	230	0.75